| Lochloosa Slough | Alachua, FL | 12.9 miles | NE |
| Mud Creek | Marion, FL | 13.8 miles | NE |
| Otter Slough | Sumter, FL | 35.4 miles | SW |
| Bray Creek | Putnam, FL | 38.5 miles | NE |
| Hunter Spring Run | Citrus, FL | 40.2 miles | SW |
| Miller Creek | Citrus, FL | 40.5 miles | SW |
| Sandfly Creek | Levy, FL | 41.7 miles | SW |
| Cross Creek | Volusia, FL | 41.8 miles | SE |
| Eph Creek | Volusia, FL | 41.8 miles | SE |
| Tick Island Creek | Volusia, FL | 42.4 miles | SE |
| Beetree Slough | Levy, FL | 42.5 miles | SW |
| Coon Gap | Citrus, FL | 42.7 miles | SW |
| Little Coon Gap | Citrus, FL | 42.8 miles | SW |
| Hayes Creek | Sumter, FL | 43.4 miles | SW |
| Little South Pass | Citrus, FL | 43.4 miles | SW |
| Tony Creek | Citrus, FL | 43.4 miles | SW |
| Buckford Creek | Citrus, FL | 43.5 miles | SW |
| The Narrows | Citrus, FL | 43.7 miles | SW |
| Grassy Creek | Levy, FL | 43.8 miles | SW |
| Bear Creek | Sumter, FL | 44.1 miles | SW |
| Salt River | Citrus, FL | 44.4 miles | SW |
| Doghead Gap | Citrus, FL | 45.8 miles | SW |
| Black Creek | Citrus, FL | 46.1 miles | SW |
| Highland Park Run | Volusia, FL | 47.1 miles | SE |
| Saint Martins River | Citrus, FL | 47.6 miles | SW |
| Head Creek | Citrus, FL | 47.7 miles | SW |
| Little Homosassa River | Citrus, FL | 48 miles | SW |
| Fish Creek | Citrus, FL | 48 miles | SW |
| Battle Creek | Citrus, FL | 48.1 miles | SW |
| Fish Creek Pass | Citrus, FL | 48.3 miles | SW |
| Sams Bayou | Citrus, FL | 48.4 miles | SW |
| Petty Creek | Citrus, FL | 48.6 miles | SW |
| Dean Dead River | Volusia, FL | 48.8 miles | SE |
| Pea Pass | Citrus, FL | 48.9 miles | SW |
| False Channel | Citrus, FL | 49.6 miles | SW |
| Botts Creek | Lake, FL | 49.7 miles | SE |
| Oyster Creek | Citrus, FL | 49.8 miles | SW |
| Deep Creek | Citrus, FL | 50.4 miles | SW |
| Little Gator Creek | Citrus, FL | 51 miles | SW |
| Gator Creek | Citrus, FL | 51.1 miles | SW |
| Seven Cabbage Cutoff | Citrus, FL | 51.3 miles | SW |
| Spring Hammock Run | Hernando, FL | 51.3 miles | SW |
| Duck Slough | Hernando, FL | 51.4 miles | SW |
| Banana River | Lake, FL | 51.8 miles | SE |
| Chub Slough | Lake, FL | 52.9 miles | SE |
| North Blind Creek | Hernando, FL | 54.5 miles | SW |
| South Blind Creek | Hernando, FL | 54.8 miles | SW |
| Haulover Creek | Hernando, FL | 55.4 miles | SW |
| Fish Creek | Hernando, FL | 56 miles | SW |
| Weaver Hole Slough | Pasco, FL | 56.6 miles | SW |
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