| Deerpen Pond | Levy, FL | 5.6 miles | SE |
| Devils Hammock | Levy, FL | 5.6 miles | SW |
| Tom Pond | Levy, FL | 5.8 miles | NW |
| Waccasassa River | Levy, FL | 5.8 miles | NW |
| Sawgrass Springs | Levy, FL | 6.3 miles | NW |
| Rocky Hammock | Levy, FL | 14.9 miles | SW |
| Big Wolf Arbor | Levy, FL | 15.6 miles | SE |
| Calbet Slough | Levy, FL | 18.2 miles | SW |
| Crow Rookery Slough | Levy, FL | 19.1 miles | SE |
| Coffee Creek | Levy, FL | 19.7 miles | SE |
| Gulf Hammock | Levy, FL | 20 miles | SW |
| Dinner Sink Pond | Marion, FL | 20.2 miles | SE |
| Little Pine Island Prairie | Marion, FL | 21.5 miles | SE |
| Waccasassa Flats | Gilchrist, FL | 21.7 miles | NW |
| Mill Pond | Alachua, FL | 22.3 miles | NE |
| Cypress Prairie | Marion, FL | 22.3 miles | SE |
| Long Pond | Alachua, FL | 23.2 miles | NE |
| Sanchez Prairie | Alachua, FL | 23.2 miles | NE |
| River Styx | Alachua, FL | 25 miles | NE |
| Big Bay | Levy, FL | 25.2 miles | SE |
| Potato Patch Bay | Alachua, FL | 25.4 miles | NE |
| Buck Bay | Alachua, FL | 26.4 miles | NE |
| Hellcat Bay | Levy, FL | 26.9 miles | SE |
| Bell Pond | Marion, FL | 28.1 miles | SE |
| Mosquito Bay | Alachua, FL | 28.3 miles | NE |
| Hawthorn Prairie | Marion, FL | 29 miles | SE |
| Black Point Swamp | Levy, FL | 29.5 miles | SW |
| Gum Root Swamp | Alachua, FL | 29.6 miles | NE |
| Long Prairie | Dixie, FL | 30.5 miles | NW |
| California Swamp | Dixie, FL | 31.1 miles | SW |
| Buzzard Roost Prairie | Columbia, FL | 33 miles | NE |
| Black Sink Prairie | Marion, FL | 34 miles | SE |
| Mud Swamp | Alachua, FL | 34.2 miles | NE |
| Board Pile Bay | Lafayette, FL | 34.8 miles | NW |
| Pocoson Swamp | Dixie, FL | 35.3 miles | SW |
| Stanley Prairie | Alachua, FL | 35.4 miles | NE |
| Morans Prairie | Alachua, FL | 35.4 miles | NE |
| California Scrub | Marion, FL | 35.6 miles | SE |
| Gooski Prairie | Marion, FL | 36.2 miles | SE |
| Saluda Swamp | Alachua, FL | 36.4 miles | NE |
| Waldron Millpond | Marion, FL | 37.4 miles | SE |
| Indian Lake Prairie | Marion, FL | 37.6 miles | SE |
| Mallory Swamp | Lafayette, FL | 38.3 miles | NW |
| Little Rock Swamp | Dixie, FL | 38.5 miles | NW |
| Fern Pond | Union, FL | 38.5 miles | NE |
| Pumpkin Swamp | Dixie, FL | 39.1 miles | NW |
| Tiger Bay | Dixie, FL | 39.8 miles | NW |
| Dekles Millpond | Union, FL | 39.8 miles | NE |
| Levys Prairie | Putnam, FL | 40 miles | NE |
| Cedar Swamp | Dixie, FL | 40.2 miles | NW |
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