| North Channel | Okaloosa, FL | 7.7 miles | SW |
| East Pass | Okaloosa, FL | 8.7 miles | SW |
| The Narrows | Okaloosa, FL | 19 miles | SW |
| Griffith Ferry Stretch | Okaloosa, FL | 21.9 miles | NW |
| Roaring Cutoff | Walton, FL | 33.1 miles | NE |
| Boynton Cutoff | Washington, FL | 34.8 miles | NE |
| Little Boynton Cutoff | Washington, FL | 34.9 miles | NE |
| Old River | Washington, FL | 39.1 miles | NE |
| Saultsman Cutoff | Santa Rosa, FL | 44.9 miles | NW |
| Cebe Land Cutoff | Santa Rosa, FL | 45.3 miles | NW |
| Seedland Cutoff | Escambia, FL | 45.3 miles | NW |
| East Channel | Escambia, FL | 45.6 miles | SW |
| Inner Harbor Channel | Escambia, FL | 45.9 miles | SW |
| West Channel | Escambia, FL | 46.1 miles | SW |
| Bay Channel | Santa Rosa, FL | 47.1 miles | SW |
| Grand Lagoon Channel | Bay, FL | 48.7 miles | SE |
| Alberson Stretch | Holmes, FL | 49.8 miles | NE |
| Perdido Pass | Baldwin, AL | 67.4 miles | SW |
| Perdido Pass | Escambia, FL | 67.6 miles | SW |
| Tom Smith Branch | Gulf, FL | 80.5 miles | SE |
| Magnolia Slough | Gulf, FL | 81.6 miles | SE |
| Porter Reach | Liberty, FL | 82.4 miles | SE |
| Upper Piney Reach | Liberty, FL | 84.7 miles | SE |
| Lower Piney Reach | Liberty, FL | 86.1 miles | SE |
| Rooted Devil | Liberty, FL | 87.5 miles | SE |
| The Cutoff | Baldwin, AL | 89 miles | NW |
| Pass Picada | Baldwin, AL | 90.5 miles | NW |
| Mobile Ship Channel | Mobile, AL | 93.1 miles | SW |
| Indian Pass | Gulf, FL | 93.2 miles | SE |
| Pinto Pass | Mobile, AL | 94.3 miles | NW |
| Old Channel | Mobile, AL | 94.3 miles | NW |
| Choctaw Pass | Mobile, AL | 94.4 miles | NW |
| Upper Reach | Mobile, AL | 94.4 miles | NW |
| Coffee Branch | Liberty, FL | 94.5 miles | SE |
| Arlington Channel | Mobile, AL | 95.2 miles | NW |
| Garrows Bend Channel | Mobile, AL | 95.6 miles | NW |
| Hollingers Island Channel | Mobile, AL | 95.7 miles | NW |
| Blakely Island Reach | Mobile, AL | 95.7 miles | NW |
| Saint Louis Reach | Mobile, AL | 95.9 miles | NW |
| Swash Channel | Baldwin, AL | 96 miles | SW |
| Dixie Cut-Off | Baldwin, AL | 96.6 miles | NW |
| Main Channel | Mobile, AL | 96.7 miles | SW |
| The Cut | Mobile, AL | 97.8 miles | SW |
| Sand Island Channel | Mobile, AL | 97.9 miles | SW |
| Saul Creek Cut Off | Gulf, FL | 97.9 miles | SE |
| Pass Drury | Mobile, AL | 99.1 miles | SW |
| Pelican Channel | Mobile, AL | 99.4 miles | SW |
| East River Cut Off | Franklin, FL | 99.7 miles | SE |
| Little Pelican Channel | Mobile, AL | 99.8 miles | SW |
| Middle Channel | Mobile, AL | 100 miles | SW |
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